By putting multiple figure handles into a graphics array, multiple figures can be saved to the same .fig file
h(1) = figure;
scatter(rand(1,100),rand(1,100));
h(2) = figure;
scatter(rand(1,100),rand(1,100));
h(3) = figure;
scatter(rand(1,100),rand(1,100));
savefig(h,'ThreeRandomScatterp...