When multiple modules are involved, avoid proliferating global names by creating a single global namespace. From there, any sub-modules can be added to the global namespace. (Further nesting will slow down performance and add unnecessary complexity.) Longer names can be used if name clashes are an issue:
var NavigationNs = NavigationNs || {};
NavigationNs.active = {};
NavigationNs.pagination = {};
NavigationNs.redirection = {};
// The second level start here.
Navigational.pagination.jquery = function();
Navigational.pagination.angular = function();
Navigational.pagination.ember = function();